| P | Rider | Team | Km/h | Lap time | Gap 1st/Prev. | |||
|---|---|---|---|---|---|---|---|---|
| 1 | Marc Marquez | Repsol Honda | 304.0 | 01:45.451 | ||||
| 2 | Andrea Dovizioso | Ducati | 307.2 | 01:45.585 | 0.134 / 0.134 | |||
| 3 | Maverick Viñales | Suzuki Ecstar | 306.9 | 01:45.627 | 0.176 / 0.042 | |||
| 4 | Aleix Espargaro | Suzuki Ecstar | 303.0 | 01:45.796 | 0.345 / 0.169 | |||
| 5 | Valentino Rossi | Movistar Yamaha | 304.9 | 01:45.875 | 0.424 / 0.079 | |||
| 6 | Jorge Lorenzo | Movistar Yamaha | 305.1 | 01:46.035 | 0.584 / 0.160 | |||
| 7 | Cal Crutchlow | LCR Honda | 303.6 | 01:46.112 | 0.661 / 0.077 | |||
| 8 | Hector Barbera* | Ducati | 308.4 | 01:46.164 | 0.713 / 0.052 | |||
| 9 | Scott Redding | Octo Pramac Yakhnich | 305.1 | 01:46.478 | 1.027 / 0.314 | |||
| 10 | Pol Espargaro | Tech 3 | 304.3 | 01:46.500 | 1.049 / 0.022 | |||
| 11 | Danilo Petrucci | Octo Pramac Yakhnich | 304.9 | 01:46.624 | 1.173 / 0.124 | |||
| 12 | Jack Miller | EG 0,0 Marc VDS | 301.9 | 01:46.899 | 1.448 / 0.275 | |||
| 13 | Stefan Bradl | Aprilia Gresini | 304.1 | 01:46.967 | 1.516 / 0.068 | |||
| 14 | Yonny Hernandez | Pull & Bear Aspar | 298.9 | 01:47.101 | 1.650 / 0.134 | |||
| 15 | Alvaro Bautista | Aprilia Gresini | 300.2 | 01:47.184 | 1.733 / 0.083 | |||
| 16 | Eugene Laverty | Pull & Bear Aspar | 304.6 | 01:47.460 | 2.009 / 0.276 | |||
| 17 | Bradley Smith | Tech 3 | 304.1 | 01:47.463 | 2.012 / 0.003 | |||
| 18 | Hiroshi Aoyama~ | Repsol Honda | 308.6 | 01:47.550 | 2.099 / 0.087 | |||
| 19 | Tito Rabat | EG 0,0 Marc VDS | 301.3 | 01:47.748 | 2.297 / 0.198 | |||
| 20 | Katsuyuki Nakasuga^ | Yamalube Racing | 300.6 | 01:48.048 | 2.597 / 0.300 | |||
| 21 | Loris Baz | Avintia Racing | 294.2 | 01:49.231 | 3.780 / 1.183 | |||
| 22 | Mike Jones° | Avintia Racing | 301.0 | 01:49.243 | 3.792 / 0.012 |
*Replaced injured Andrea Iannone at Ducati for the Japanese Grand Prix
~Replaced injured Dani Pedrosa from FP3 onwards
^Wild card entry
°Replaced Hector Barbera at Avintia Racing for the Japanese Grand Prix
Note: Repsol Honda rider Dani Pedrosa withdrew from the Japanese Grand Prix after fracturing his collarbone in Friday's FP2