| P | Rider | Team | Km/h | Lap time | Gap 1st/Prev. | |||
|---|---|---|---|---|---|---|---|---|
| 1 | Marc Marquez | Repsol Honda | 289.7 | 01:33.068 | ||||
| 2 | Valentino Rossi | Movistar Yamaha | 291.4 | 01:33.138 | 0.070 / 0.070 | |||
| 3 | Michele Pirro* | Ducati | 293.5 | 01:33.318 | 0.250 / 0.180 | |||
| 4 | Andrea Dovizioso | Ducati | 296.9 | 01:33.340 | 0.272 / 0.022 | |||
| 5 | Jorge Lorenzo | Movistar Yamaha | 291.4 | 01:33.369 | 0.301 / 0.029 | |||
| 6 | Pol Espargaro | Tech 3 | 290.0 | 01:33.391 | 0.323 / 0.022 | |||
| 7 | Maverick Viñales | Suzuki Ecstar | 291.1 | 01:33.426 | 0.358 / 0.035 | |||
| 8 | Aleix Espargaro | Suzuki Ecstar | 287.5 | 01:33.549 | 0.481 / 0.123 | |||
| 9 | Cal Crutchlow | LCR Honda | 287.0 | 01:33.631 | 0.563 / 0.082 | |||
| 10 | Hector Barbera | Avintia Racing | 292.8 | 01:33.692 | 0.624 / 0.061 | |||
| 11 | Scott Redding | Octo Pramac Yakhnich | 291.4 | 01:33.735 | 0.667 / 0.043 | |||
| 12 | Dani Pedrosa | Repsol Honda | 291.2 | 01:33.771 | 0.703 / 0.036 | |||
| 13 | Alvaro Bautista | Aprilia Gresini | 289.6 | 01:34.119 | 1.051 / 0.348 | |||
| 14 | Danilo Petrucci | Octo Pramac Yakhnich | 289.7 | 01:34.199 | 1.131 / 0.080 | |||
| 15 | Stefan Bradl | Aprilia Gresini | 289.4 | 01:34.319 | 1.251 / 0.120 | |||
| 16 | Tito Rabat | EG 0,0 Marc VDS | 287.0 | 01:34.628 | 1.560 / 0.309 | |||
| 17 | Alex Lowes^ | Tech 3 | 287.1 | 01:34.654 | 1.586 / 0.026 | |||
| 18 | Eugene Laverty | Pull & Bear Aspar | 289.3 | 01:34.863 | 1.795 / 0.209 | |||
| 19 | Yonny Hernandez | Pull & Bear Aspar | 287.6 | 01:34.973 | 1.905 / 0.110 | |||
| 20 | Javier Fores° | Avintia Racing | 285.2 | 01:35.545 | 2.477 / 0.572 |
*Replaced injured Andrea Iannone from FP4 onwards
^Replaced injured Bradley Smith for the San Marino Grand Prix
°Replaced injured Loris Baz for the San Marino Grand Prix
Note: Ducati Team rider Andrea Iannone was declared unfit to continue riding prior to FP3
Team Estrella Galicia 0,0 Marc VDS rider Jack Miller withdrew on Sunday morning due to pain in his right hand and the demands of riding around Misano