| P | Rider | Team | Km/h | Time/Gap | ||||
|---|---|---|---|---|---|---|---|---|
| 1 | Marc Marquez | Repsol Honda | 140.0 | 50:41.565 | ||||
| 2 | Danilo Petrucci | Octo Pramac Racing | 139.9 | +1.192 | ||||
| 3 | Andrea Dovizioso | Ducati | 139.5 | +11.706 | ||||
| 4 | Maverick Viñales | Movistar Yamaha | 139.2 | +16.559 | ||||
| 5 | Michele Pirro* | Ducati | 139.1 | +19.499 | ||||
| 6 | Jack Miller | EG 0,0 Marc VDS | 138.9 | +24.882 | ||||
| 7 | Scott Redding | Octo Pramac Racing | 138.5 | +33.872 | ||||
| 8 | Alex Rins | Suzuki Ecstar | 138.4 | +34.662 | ||||
| 9 | Jonas Folger | Tech 3 | 137.6 | +54.082 | ||||
| 10 | Bradley Smith | Red Bull KTM | 137.4 | +57.964 | ||||
| 11 | Pol Espargaro | Red Bull KTM | 137.3 | +1:00.440 | ||||
| 12 | Alvaro Bautista | Pull&Bear Aspar | 136.5 | +1:17.356 | ||||
| 13 | Cal Crutchlow | LCR Honda | 135.7 | +1:35.588 | ||||
| 14 | Dani Pedrosa | Repsol Honda | 135.6 | +1:38.857 | ||||
| 15 | Johann Zarco | Tech 3 | 134.6 | +2:02.212 | ||||
| 16 | Loris Baz | Reale Avintia Racing | 134.3 | 1 Lap | ||||
| 17 | Karel Abraham | Pull&Bear Aspar | 133.1 | 1 Lap | ||||
| Not Classified | ||||||||
| Tito Rabat | EG 0,0 Marc VDS | 136.4 | 9 Laps | |||||
| Andrea Iannone | Suzuki Ecstar | 136.1 | 12 Laps | |||||
| Sam Lowes | Aprilia Gresini | 137.1 | 13 Laps | |||||
| Aleix Espargaro | Aprilia Gresini | 137.4 | 15 Laps | |||||
| Hector Barbera | Reale Avintia Racing | 137.4 | 17 Laps | |||||
| Jorge Lorenzo | Ducati | 138.5 | 22 Laps | |||||
*Wild card entry
Note: Movistar Yamaha MotoGP rider Valentino Rossi did not take part in the San Marino Grand Prix after breaking his tibia and fibula in a training crash