| P | Rider | Team | Km/h | Lap time | Gap 1st/Prev. | |||
|---|---|---|---|---|---|---|---|---|
| 1 | Marc Marquez | Repsol Honda | 323.9 | 02:00.083 | ||||
| 2 | Maverick Viñales | Movistar Yamaha | 322.2 | 02:00.192 | 0.109 / 0.109 | |||
| 3 | Andrea Dovizioso | Ducati | 320.2 | 02:00.295 | 0.212 / 0.103 | |||
| 4 | Johann Zarco | Tech 3 | 321.2 | 02:00.346 | 0.263 / 0.051 | |||
| 5 | Alex Rins | Suzuki Ecstar | 322.0 | 02:00.503 | 0.420 / 0.157 | |||
| 6 | Andrea Iannone | Suzuki Ecstar | 322.9 | 02:00.614 | 0.531 / 0.111 | |||
| 7 | Valentino Rossi | Movistar Yamaha | 322.5 | 02:00.626 | 0.543 / 0.012 | |||
| 8 | Aleix Espargaro | Aprilia Gresini | 320.5 | 02:00.818 | 0.735 / 0.192 | |||
| 9 | Dani Pedrosa | Repsol Honda | 316.4 | 02:00.829 | 0.746 / 0.011 | |||
| 10 | Danilo Petrucci | Alma Pramac Racing | 320.9 | 02:01.074 | 0.991 / 0.245 | |||
| 11 | Franco Morbidelli | EG 0,0 Marc VDS | 318.5 | 02:01.077 | 0.994 / 0.003 | |||
| 12 | Michele Pirro° | Ducati | 309.4 | 02:01.275 | 1.192 / 0.198 | |||
| 13 | Jack Miller | Alma Pramac Racing | 323.0 | 02:01.277 | 1.194 / 0.002 | |||
| 14 | Stefan Bradl* | LCR Honda Castrol | 321.9 | 02:01.343 | 1.260 / 0.066 | |||
| 15 | Hafizh Syahrin | Tech 3 | 316.5 | 02:01.391 | 1.308 / 0.048 | |||
| 16 | Alvaro Bautista | Angel Nieto Team | 321.6 | 02:01.544 | 1.461 / 0.153 | |||
| 17 | Bradley Smith | Red Bull KTM | 307.5 | 02:01.757 | 1.674 / 0.213 | |||
| 18 | Karel Abraham | Angel Nieto Team | 318.0 | 02:01.818 | 1.735 / 0.061 | |||
| 19 | Pol Espargaro | Red Bull KTM | 316.3 | 02:01.896 | 1.813 / 0.078 | |||
| 20 | Scott Redding | Aprilia Gresini | 318.6 | 02:01.920 | 1.837 / 0.024 | |||
| 21 | Thomas Luthi | EG 0,0 Marc VDS | 315.2 | 02:02.010 | 1.927 / 0.090 | |||
| 22 | Xavier Simeon | Reale Avintia Racing | 316.9 | 02:02.258 | 2.175 / 0.248 | |||
| 23 | Takaaki Nakagami | LCR Honda Idemitsu | 309.0 | 02:02.752 | 2.669 / 0.494 | |||
| 24 | Jordi Torres^ | Reale Avintia Racing | 317.0 | 02:02.963 | 2.880 / 0.211 |
°Replaced Jorge Lorenzo from FP3 onwards
*Replaced Cal Crutchlow for the Malaysian Grand Prix
^Replaced Tito Rabat for the Malaysian Grand Prix
Note: Ducati Team's Jorge Lorenzo withdrew from the Malaysian Grand Prix following FP2 due to continued pain from his left wrist injury he sustained at the Thai Grand Prix