| P | Rider | Team | Km/h | Lap time | Gap 1st/Prev. | |||
|---|---|---|---|---|---|---|---|---|
| 1 | Marc Marquez | Repsol Honda | 289.9 | 01:32.451 | ||||
| 2 | Jorge Lorenzo | Movistar Yamaha | 292.6 | 01:32.631 | 0.180 / 0.180 | |||
| 3 | Maverick Viñales | Suzuki Ecstar | 291.4 | 01:32.839 | 0.388 / 0.208 | |||
| 4 | Pol Espargaro | Tech 3 | 290.8 | 01:32.861 | 0.410 / 0.022 | |||
| 5 | Cal Crutchlow | LCR Honda | 291.1 | 01:33.074 | 0.623 / 0.213 | |||
| 6 | Valentino Rossi | Movistar Yamaha | 290.6 | 01:33.075 | 0.624 / 0.001 | |||
| 7 | Michele Pirro* | Ducati | 295.1 | 01:33.086 | 0.635 / 0.011 | |||
| 8 | Aleix Espargaro | Suzuki Ecstar | 286.7 | 01:33.272 | 0.821 / 0.186 | |||
| 9 | Dani Pedrosa | Repsol Honda | 293.3 | 01:33.319 | 0.868 / 0.047 | |||
| 10 | Alvaro Bautista | Aprilia Gresini | 290.2 | 01:33.480 | 1.029 / 0.161 | |||
| 11 | Scott Redding | Octo Pramac Yakhnich | 289.2 | 01:33.598 | 1.147 / 0.118 | |||
| 12 | Hector Barbera | Avintia Racing | 292.2 | 01:33.598 | 1.147 / 0.000 | |||
| 13 | Andrea Dovizioso | Ducati | 297.1 | 01:33.830 | 1.379 / 0.232 | |||
| 14 | Alex Lowes^ | Tech 3 | 287.9 | 01:33.835 | 1.384 / 0.005 | |||
| 15 | Danilo Petrucci | Octo Pramac Yakhnich | 290.0 | 01:33.983 | 1.532 / 0.148 | |||
| 16 | Yonny Hernandez | Pull & Bear Aspar | 290.2 | 01:34.011 | 1.560 / 0.028 | |||
| 17 | Jack Miller | EG 0,0 Marc VDS | 288.2 | 01:34.165 | 1.714 / 0.154 | |||
| 18 | Stefan Bradl | Aprilia Gresini | 287.9 | 01:34.171 | 1.720 / 0.006 | |||
| 19 | Tito Rabat | EG 0,0 Marc VDS | 287.5 | 01:34.222 | 1.771 / 0.051 | |||
| 20 | Eugene Laverty | Pull & Bear Aspar | 291.8 | 01:34.989 | 2.538 / 0.767 | |||
| 21 | Javier Fores° | Avintia Racing | 285.0 | 01:35.471 | 3.020 / 0.482 |
*Wild card entry
^Replaced injured Bradley Smith for the San Marino Grand Prix
°Replaced injured Loris Baz for the San Marino Grand Prix
Note: Ducati Team rider Andrea Iannone did not take part in this session due to his crash in FP1, was declared unfit to continue riding prior to FP3