| P | Rider | Team | Km/h | Lap time | Gap 1st/Prev. | |||
|---|---|---|---|---|---|---|---|---|
| 1 | Marc Marquez | Repsol Honda | 303.9 | 01:44.987 | ||||
| 2 | Cal Crutchlow | LCR Honda | 305.3 | 01:45.026 | 0.039 / 0.039 | |||
| 3 | Andrea Dovizioso | Ducati | 307.9 | 01:45.057 | 0.070 / 0.031 | |||
| 4 | Hector Barbera* | Ducati | 309.6 | 01:45.120 | 0.133 / 0.063 | |||
| 5 | Aleix Espargaro | Suzuki Ecstar | 304.3 | 01:45.155 | 0.168 / 0.035 | |||
| 6 | Maverick Viñales | Suzuki Ecstar | 305.2 | 01:45.284 | 0.297 / 0.129 | |||
| 7 | Valentino Rossi | Movistar Yamaha | 303.1 | 01:45.417 | 0.430 / 0.133 | |||
| 8 | Pol Espargaro | Tech 3 | 304.8 | 01:45.680 | 0.693 / 0.263 | |||
| 9 | Jorge Lorenzo | Movistar Yamaha | 303.9 | 01:45.794 | 0.807 / 0.114 | |||
| 10 | Danilo Petrucci | Octo Pramac Yakhnich | 305.0 | 01:45.844 | 0.857 / 0.050 | |||
| 11 | Scott Redding | Octo Pramac Yakhnich | 306.2 | 01:45.854 | 0.867 / 0.010 | |||
| 12 | Stefan Bradl | Aprilia Gresini | 304.6 | 01:46.012 | 1.025 / 0.158 | |||
| 13 | Yonny Hernandez | Pull & Bear Aspar | 303.7 | 01:46.236 | 1.249 / 0.224 | |||
| 14 | Katsuyuki Nakasuga^ | Yamalube Racing | 302.4 | 01:46.807 | 1.820 / 0.571 | |||
| 15 | Alvaro Bautista | Aprilia Gresini | 301.5 | 01:46.962 | 1.975 / 0.155 | |||
| 16 | Tito Rabat | EG 0,0 Marc VDS | 301.0 | 01:47.327 | 2.340 / 0.365 | |||
| 17 | Hiroshi Aoyama~ | Repsol Honda | 307.5 | 01:47.522 | 2.535 / 0.195 | |||
| 18 | Bradley Smith | Tech 3 | 302.8 | 01:47.556 | 2.569 / 0.034 | |||
| 19 | Jack Miller | EG 0,0 Marc VDS | 299.7 | 01:48.184 | 3.197 / 0.628 | |||
| 20 | Loris Baz | Avintia Racing | 297.3 | 01:48.283 | 3.296 / 0.099 | |||
| 21 | Mike Jones° | Avintia Racing | 302.5 | 01:49.071 | 4.084 / 0.788 |
*Replaced injured Andrea Iannone at Ducati for the Japanese Grand Prix
^Wild card entry
~Replaced injured Dani Pedrosa from FP3 onwards
°Replaced Hector Barbera at Avintia Racing for the Japanese Grand Prix
Note: Repsol Honda rider Dani Pedrosa withdrew from the Japanese Grand Prix after fracturing his collarbone in Friday's FP2
Aspar Team MotoGP's Eugene Laverty did not take part in FP3
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